While BLAST is faster than any Smith-Waterman implementation for most conditions, it are not able to "ensure the exceptional alignments of your query and database sequences" as Smith-Waterman algorithm does. The Smith-Waterman algorithm was an extension of a preceding exceptional system, the Needleman–Wunsch algorithm, which was the 1st sequence
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When BLAST is faster than any Smith-Waterman implementation for most instances, it can not "guarantee the optimal alignments with the question and database sequences" as Smith-Waterman algorithm does. The Smith-Waterman algorithm was an extension of a former optimum system, the Needleman–Wunsch algorithm, which was the 1st sequence alignment algo